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M{'o}ssbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models

机译:m {\“} ssbauer表征了一个不寻常的高旋转侧面   过氧化物还原酶活性位点中的过氧化物-Fe3 +物种   Desulfoarculus Baarsii。相关模型的密度泛函计算

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摘要

Superoxide reductase (SOR) is an Fe protein that catalyzes the reduction ofsuperoxide to give H(2)O(2). Recently, the mutation of the Glu47 residue intoalanine (E47A) in the active site of SOR from Desulfoarculus baarsii hasallowed the stabilization of an iron-peroxo species when quickly reacted withH(2)O(2) [Math{\'e} et al. (2002) J. Am. Chem. Soc. 124, 4966-4967]. To furtherinvestigate this non-heme peroxo-iron species, we have carried out aM{\"o}ssbauer study of the (57)Fe-enriched E47A SOR from D. baarsii reactedquickly with H(2)O(2). Considering the M{\"o}ssbauer data, we conclude, inconjunction with the other spectroscopic data available and with the results ofdensity functional calculations on related models, that this speciescorresponds to a high-spin side-on peroxo-Fe(3+) complex. This is one of thefirst examples of such a species in a biological system for which M{\"o}ssbauerparameters are now available: delta(/Fe) = 0.54 (1) mm/s, DeltaE(Q) = -0.80 (5)mm/s, and the asymmetry parameter eta = 0.60 (5) mm/s. The M{\"o}ssbauer andspin Hamiltonian parameters have been evaluated on a model from the side-onperoxo complex (model 2) issued from the oxidized iron center in SOR fromPyrococcus furiosus, for which structural data are available in the literature[Yeh et al. (2000) Biochemistry 39, 2499-2508]. For comparison, similarcalculations have been carried out on a model derived from 2 (model 3), wherethe [CH(3)-S](1)(-) group has been replaced by the neutral [NH(3)](0) group[Neese and Solomon (1998) J. Am. Chem. Soc. 120, 12829-12848]. Both models 2and 3 contain a formally high-spin Fe(3+) ion (i.e., with empty minority spinorbitals). We found, however, a significant fraction (approximately 0.6 for 2,approximately 0.8 for 3) of spin (equivalently charge) spread over two occupied(minority spin) orbitals. The quadrupole splitting value for 2 is found to benegative and matches quite well the experimental value. The computed quadrupoletensors are rhombic in the case of 2 and axial in the case of 3. Thisdifference originates directly from the presence of the thiolate ligand in 2. Acorrelation between experimental isomer shifts for Fe(3+) mononuclear complexeswith computed electron densities at the iron nucleus has been built and used toevaluate the isomer shift values for 2 and 3 (0.56 and 0.63 mm/s,respectively). A significant increase of isomer shift value is found upon goingfrom a methylthiolate to a nitrogen ligand for the Fe(3+) ion, consistent withcovalency effects due to the presence of the axial thiolate ligand. Consideringthat the isomer shift value for 3 is likely to be in the 0.61-0.65 mm/s range[Horner et al. (2002) Eur. J. Inorg. Chem., 3278-3283], the isomer shift valuefor a high-spin eta(2)-O(2) Fe(3+) complex with an axial thiolate group can beestimated to be in the 0.54-0.58 mm/s range. The occurrence of a side-on peroxointermediate in SOR is discussed in relation to the recent data published for aside-on peroxo-Fe(3+) species in another biological system [Karlsson et al.(2003) Science 299, 1039-1042].
机译:超氧化物还原酶(SOR)是一种铁蛋白,可催化还原超氧化物以生成H(2)O(2)。最近,当与H(2)O(2)快速反应时,来自Desulfoarculus baarsii的SOR活性位点中Glu47残基变成丙氨酸(E47A)的突变已使铁过氧化物物种得以稳定[Math {\'e}等。 (2002)J. Am。化学Soc。 124,4966-4967]。为了进一步研究这种非血红素过氧铁物种,我们对D. baarsii富含(57)Fe的E47A SOR与H(2)O(2)迅速反应进行了M {\“ o} ssbauer研究。我们得出的结论是,与其他可用的光谱数据以及相关模型上的密度泛函计算结果相结合,该物种与高旋侧过氧Fe(3+)络合物相对应。这是生物系统中此类物种的第一个示例之一,对于该物种,M {\ o} ssbauer参数现已可用:delta(/ Fe)= 0.54(1)mm / s,DeltaE(Q)= -0.80(5毫米/秒,并且不对称参数eta = 0.60(5)毫米/秒。M {\“ o} ssbbauer和自旋哈密顿量参数已根据氧化后产生的侧-过氧配合物(模型2)进行了评估来自激烈热球菌的SOR中的铁中心,其结构数据可在文献中获得[Yeh等。 (2000)Biochemistry 39,2499-2508]。为了进行比较,对源自2的模型(模型3)进行了类似的计算,其中[CH(3)-S](1)(-)组已被中性[NH(3)](0)取代小组[Neese and Solomon(1998)J. Am。化学Soc。 120,12829-12848]。模型2和模型3都包含一个正式的高自旋Fe(3+)离子(即具有空的少数自旋轨道)。但是,我们发现自旋(等效电荷)的很大一部分(2约0.6,3约0.8)分布在两个占据的(少数自旋)轨道上。发现2的四极分裂值是负值,与实验值非常匹配。计算的四极子在2的情况下是菱形的,在3的情况下是轴向的。这种差异直接源于2中硫醇盐配体的存在。Fe(3+)单核配合物的实验异构体位移与铁的计算电子密度之间的相关性已建立核,并用于评估2和3(分别为0.56和0.63 mm / s)的异构体位移值。从甲基硫醇盐到Fe(3+)离子的氮配体时,发现异构体转移值显着增加,这与由于存在轴向硫醇盐配体而引起的共价效应一致。考虑到3的异构体位移值很可能在0.61-0.65 mm / s的范围内[Horner et al。 (2002)Eur。 J. Inorg。 Chem。,3278-3283],具有轴向硫醇盐基团的高旋旋eta(2)-O(2)Fe(3+)配合物的异构体位移值可以估计为0.54-0.58 mm / s。结合最近发表的另一生物系统中过氧铁(Fe + 3 +)物种的数据,讨论了SOR中过氧过氧中间体的发生[Karlsson et al。(2003)Science 299,1039-1042] 。

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